Information for 5-RACCHWASCCAAA (Motif 6)

C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A
Reverse Opposite:
A C G T C A G T A C G T A C T G A C T G A T C G C G A T C G A T C A G T C A T G A C T G C G A T A G T C
p-value:1e-12
log p-value:-2.992e+01
Information Content per bp:1.690
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.14%
Number of Background Sequences with motif182.5
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets41.0 +/- 24.1bp
Average Position of motif in Background49.7 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:RACCHWASCCAAA
------TGCCAA-
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:RACCHWASCCAAA---
-----AAACCACAGAN
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:RACCHWASCCAAA---
----NWAACCACADNN
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:RACCHWASCCAAA
----CGTGCCAAG
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:RACCHWASCCAAA--
-----ATGCCAGACN
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:RACCHWASCCAAA--
-----AAACCACANN
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:RACCHWASCCAAA--
-----AAACCACAGC
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:RACCHWASCCAAA-
----NAAACCACAG
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:RACCHWASCCAAA-
----GGTGCCAAGT
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RACCHWASCCAAA--
---ACTAGCCAATCA
 C T A G C G T A G T A C G T A C G T C A C G T A G C T A T A G C A G T C A G T C C G T A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A