Information for 8-GAGBRRCWSC (Motif 30)

A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
Reverse Opposite:
A C T G A T C G G C A T A C T G A G T C G A T C T C A G A G T C G A C T A G T C
p-value:1e-7
log p-value:-1.738e+01
Information Content per bp:1.584
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 28.4bp
Average Position of motif in Background40.1 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGBRRCWSC
NTGATTGACAGN
 A C G T A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGBRRCWSC
BTGABTGACAGS
 A C G T A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGBRRCWSC----
AGAGRRACAGCWGAC
 A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C A C G T A C G T A C G T A C G T
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGBRRCWSC-
TGAGTGACAGSC
 A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Spz1/MA0111.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGBRRCWSC
AGGGTAACAGC
 A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGBRRCWSC
CTTGAGTGGCT--
 A C G T A C G T A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGBRRCWSC
TGGAACAGMA--
 A C G T A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGBRRCWSC
GGGCGGGACC
 A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGBRRCWSC
CGGAGC------
 A C G T A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GAGBRRCWSC
TGGGGAAGGGCM--
 A C G T A C G T A C G T A C G T A C T G C T G A C T A G A G T C C T A G T C A G G T A C C G T A T A G C T G A C
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T