Information for 8-VAATAAATCTSTC (Motif 18)

T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
Reverse Opposite:
A C T G C T G A T A C G C G T A C T A G C G T A A C G T A C G T A G C T C T G A A G C T A C G T A G T C
p-value:1e-10
log p-value:-2.436e+01
Information Content per bp:1.713
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif196.0
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets63.0 +/- 29.2bp
Average Position of motif in Background50.1 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--VAATAAATCTSTC
GGCCATAAATCAC--
 A C G T A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----VAATAAATCTSTC
CTACCAATAAAATTCT-
 A C G T A C G T A C G T A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----VAATAAATCTSTC
AAAGGTAATAAAATTT--
 A C G T A C G T A C G T A C G T A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----VAATAAATCTSTC
TACTGGAAAAAAAA----
 A C G T A C G T A C G T A C G T A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-VAATAAATCTSTC
CCAATAAAAA----
 A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:VAATAAATCTSTC
---CAAATCACTG
 T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--VAATAAATCTSTC
GGCCATAAATCA---
 A C G T A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-VAATAAATCTSTC
CCAATAAAAC----
 A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-VAATAAATCTSTC
GCAATAAAA-----
 A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-VAATAAATCTSTC
CCAATAAAAA----
 A C G T T C A G C G T A C T G A G A C T C T G A T G C A C G T A G A C T A G T C C G A T A T G C G A C T G T A C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T