Information for 6-CTGCCAATAT (Motif 6)

A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
Reverse Opposite:
T C G A A G C T C G T A G A C T A C G T C A T G A T C G A G T C C G T A A C T G
p-value:1e-11
log p-value:-2.583e+01
Information Content per bp:1.835
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.38%
Number of Background Sequences with motif254.5
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets38.6 +/- 26.8bp
Average Position of motif in Background50.3 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAATAT
GGTGCCAAGT-
 A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTGCCAATAT
-TGCCAA---
 A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------CTGCCAATAT-
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAATAT
CGTGCCAAG--
 A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTGCCAATAT
TTGCCAAG--
 A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CTGCCAATAT
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CTGCCAATAT
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAATAT---
NNTNNCAATATTAG
 A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAATAT---
NNTNNCAATATTAG
 A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CTGCCAATAT
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T A G T A G C G T A C C G T A C T G A C G A T T C G A A G C T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C