Information for 3-CTCATAAAAC (Motif 3)

T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
Reverse Opposite:
C A T G G C A T G C A T A G C T C G A T C T G A A G C T A C T G C G T A A T C G
p-value:1e-14
log p-value:-3.293e+01
Information Content per bp:1.566
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.23%
Number of Background Sequences with motif305.1
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets45.5 +/- 29.0bp
Average Position of motif in Background47.4 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.1/Jaspar

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAC
CCAATAAAAA
 T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAC
NCYAATAAAA-
 A C G T T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAC
GTCATAAAAN
 T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CTCATAAAAC
CCYMATAAAA-
 A C G T T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAC
GGTAATAAAAA
 A C G T T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAC
CCAATAAAAA
 T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAC
CCAATAAAAC
 T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CTCATAAAAC
GCAATAAAA-
 T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTCATAAAAC-
NGYCATAAAWCH
 A C G T T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CTCATAAAAC
AAGCCATAAAA-
 A C G T A C G T T A G C G C A T T G A C T C G A G A C T G C T A C T G A C G T A C G T A G T A C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T