Information for 3-GCAGTCTRATCCC (Motif 6)

A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G G T C A A C G T A G C T C T G A A C T G C G T A A G T C A C G T A C T G A T G C
p-value:1e-11
log p-value:-2.719e+01
Information Content per bp:1.854
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.2 +/- 33.9bp
Average Position of motif in Background56.5 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0015.1_Crx/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCAGTCTRATCCC-----
--AGGCTAATCCCCAANG
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GCAGTCTRATCCC
-----ATAATCCC
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAGTCTRATCCC---
GNNAGCTAATCCCCCN
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCAGTCTRATCCC
----CTTAATCCC
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCAGTCTRATCCC
-----TTAATCCC
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCAGTCTRATCCC
----GCTAATCC-
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCAGTCTRATCCC-
------TAATCCCN
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCAGTCTRATCCC-
----GCTAATCCCC
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCAGTCTRATCCC
-----YTAATCCY
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCAGTCTRATCCC-
----NYTAATCCYB
 A T C G G T A C C G T A A C T G A C G T A G T C A G C T T C A G G T C A A C G T A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T