Information for 3-RTGTTATCATTGYMTT (Motif 5)

C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
Reverse Opposite:
G T C A G T C A C A G T C T G A A G T C C G T A G T C A C G A T A C T G C G T A A C G T C T G A C G T A A G T C G T C A A G T C
p-value:1e-11
log p-value:-2.741e+01
Information Content per bp:1.739
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif13.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.4 +/- 21.4bp
Average Position of motif in Background52.7 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RTGTTATCATTGYMTT
NNNTGTTGTTGTTNG---
 A C G T A C G T C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G A C G T A C G T A C G T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RTGTTATCATTGYMTT
NATGACATCATCNNN--
 A C G T C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T A C G T A C G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:RTGTTATCATTGYMTT
-YSTTATCT-------
 C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
A C G T A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RTGTTATCATTGYMTT
NRRTGACGTCAT------
 A C G T A C G T C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RTGTTATCATTGYMTT
-TGTTTACTTAGG---
 C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T A C G T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RTGTTATCATTGYMTT
NGATGACGTCAT------
 A C G T A C G T C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

JUN/MA0488.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RTGTTATCATTGYMTT
ATGACATCATCNN---
 C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T A C G T A C G T A C G T

GATA5/MA0766.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:RTGTTATCATTGYMTT
-TCTTATCT-------
 C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
A C G T A G C T A T G C G A C T C G A T C G T A A G C T A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RTGTTATCATTGYMTT
TCCATGTTTACTTTG----
 A C G T A C G T A C G T C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.59
Offset:6
Orientation:forward strand
Alignment:RTGTTATCATTGYMTT
------CCATTGTTTT
 C T A G A C G T A C T G C G A T A G C T T C G A C G A T A G T C C G T A A C G T C G A T C T A G G A C T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T