Information for 6-CAGGCAGGCAGSCAGA (Motif 12)

T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
Reverse Opposite:
A G C T A T G C C G A T A C T G A T C G A G T C C G A T C A T G T A G C A T G C A G C T A C T G A G T C G A T C G A C T A T C G
p-value:1e-10
log p-value:-2.354e+01
Information Content per bp:1.707
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif21.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets38.4 +/- 18.3bp
Average Position of motif in Background44.2 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CAGGCAGGCAGSCAGA
-TGGCAGNCTGCCAG-
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAGGCAGGCAGSCAGA
TTGGCANNNTGCCAAG
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGGCAGGCAGSCAGA
-TGGCACCATGCCAA-
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGGCAGSCAGA--
---SCAGYCADGCATGAC
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CAGGCAGGCAGSCAGA
-------BCAGACWA-
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGGCAGGCAGSCAGA
--AGGTGNCAGACAG-
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGGCAGGCAGSCAGA
CWGGCGGGAA------
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGGCAGGCAGSCAGA
AAGGCAAGTGT-----
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAGGCAGSCAGA
GGAAGGAAGGAAGGAAGG
 A C G T A C G T T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CAGGCAGGCAGSCAGA--
--NGTAGGTTGGCATNNN
 T A G C C G T A C A T G A C T G A G T C C T G A A T C G A C T G G A T C C G T A A C T G T A G C G T A C C G T A T A C G C T G A A C G T A C G T
A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T