Information for 5-SCTYGTAAAWMCA (Motif 8)

A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
Reverse Opposite:
A G C T A C T G A C G T C G A T A C G T A C G T A C G T C G T A A G T C C T G A C T G A A C T G A T G C
p-value:1e-14
log p-value:-3.262e+01
Information Content per bp:1.868
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.9 +/- 16.7bp
Average Position of motif in Background53.9 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:SCTYGTAAAWMCA
GCTCGTAAAAA--
 A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---SCTYGTAAAWMCA
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---SCTYGTAAAWMCA
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:SCTYGTAAAWMCA
AGTCGTAAAAA--
 A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:SCTYGTAAAWMCA
-GTCGTAAAAA--
 A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:SCTYGTAAAWMCA
GGTCGTAAAAA--
 A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:SCTYGTAAAWMCA
GGTCGTAAAAT--
 A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T A C G T

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---SCTYGTAAAWMCA-
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---SCTYGTAAAWMCA-
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:SCTYGTAAAWMCA
GGTCGTAAAATT-
 A T C G A G T C A G C T G A C T A C T G A C G T C G T A C G T A C G T A C G T A G T C A G T A C C T G A
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T