Information for 6-WTTTATAGATACCTTG (Motif 6)

C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
Reverse Opposite:
A G T C G T C A C G T A A C T G T C A G G A C T G T C A A G C T A G T C G A C T G T C A C G A T C G T A G C T A T C G A G C T A
p-value:1e-15
log p-value:-3.460e+01
Information Content per bp:1.663
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.1 +/- 25.1bp
Average Position of motif in Background56.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------WTTTATAGATACCTTG
NNNNNNCTTTTATAN--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------WTTTATAGATACCTTG
NNNNNNCTTTTATAN--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----WTTTATAGATACCTTG
NNANTTTTATTGGNNN----
 A C G T A C G T A C G T A C G T C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-WTTTATAGATACCTTG
NTTTTATTGG-------
 A C G T C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--WTTTATAGATACCTTG
DGWTTTATGRCN------
 A C G T A C G T C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---WTTTATAGATACCTTG
TCTATTTTTAGA-------
 A C G T A C G T A C G T C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:WTTTATAGATACCTTG
TTTTATTGC-------
 C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:WTTTATAGATACCTTG
TTTTATTRGN------
 C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:WTTTATAGATACCTTG
TTTTATKRGG------
 C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-WTTTATAGATACCTTG
TTTTTATTGG-------
 A C G T C G A T A C G T C A G T C G A T C G T A A C G T C T G A T A C G C T G A C A G T C T G A A G T C G T A C G A C T A C G T C T A G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T