Information for 5-GCTTTGCAASGTACAG (Motif 4)

C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
Reverse Opposite:
A G T C G C A T C A T G A G C T T G C A A T G C A T G C C G A T A C G T A C T G T A G C G T C A T C G A C G T A C T A G A G T C
p-value:1e-16
log p-value:-3.746e+01
Information Content per bp:1.728
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.3 +/- 18.2bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTGCAASGTACAG--
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCTTTGCAASGTACAG-
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GCTTTGCAASGTACAG
------CCAGGAACAG
 C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCTTTGCAASGTACAG
CCGCATAGCAACGGA---
 A C G T A C G T C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCTTTGCAASGTACAG
TACCATAGCAACGGT---
 A C G T A C G T C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GCTTTGCAASGTACAG
------CAAAGGTCAG
 C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GCTTTGCAASGTACAG
-CTTGGCAA-------
 C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCTTTGCAASGTACAG
NNTTGGCANN------
 C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.49
Offset:11
Orientation:reverse strand
Alignment:GCTTTGCAASGTACAG-
-----------CACAGN
 C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.48
Offset:1
Orientation:forward strand
Alignment:GCTTTGCAASGTACAG
-HTTTCCCASG-----
 C T A G A G T C C G A T A C G T A C G T A C T G A G T C G T C A C G T A T A C G A T C G A C G T C T G A G T A C C G T A C T A G
A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T A C G T A C G T