Information for 22-GAGGAGCCAGACGAGC (Motif 38)

A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C G T A G T C A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.419e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets73.0 +/- 10.4bp
Average Position of motif in Background34.0 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGAGCCAGACGAGC
-AGGTGHCAGACA---
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GAGGAGCCAGACGAGC
------CCAGACRSVB
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCCAGACGAGC
-AGGTGNCAGACAG--
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGGAGCCAGACGAGC
---ATGCCAGACN---
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GAGGAGCCAGACGAGC
------CCAGACAG--
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGGAGCCAGACGAGC---
----TCCCAGMCRAGCCCC
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGGAGCCAGACGAGC--
-CAAATCCAGACATCACA
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGGAGCCAGACGAGC
-AGGAAACAGCTG---
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GAGGAGCCAGACGAGC
------BCAGACWA--
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GAGGAGCCAGACGAGC-
--AGCAACAGCCGCACC
 A C T G C G T A A C T G A C T G C G T A A C T G A G T C A G T C C G T A A C T G C G T A A G T C A C T G C G T A A C T G A G T C A C G T
A C G T A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C