Information for 23-GCAGGCATTCTGG (Motif 35)

A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
Reverse Opposite:
A T G C G A T C C G T A C T A G C T G A C T G A A G C T C T A G T A G C G T A C A C G T A T C G A G T C
p-value:1e-6
log p-value:-1.564e+01
Information Content per bp:1.652
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif144.0
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets55.5 +/- 24.7bp
Average Position of motif in Background50.0 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGGCATTCTGG--
SCAGYCADGCATGAC
 A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NRF1/MA0506.1/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGCATTCTGG
TGCGCAGGCGC-----
 A C G T A C G T A C G T A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGCATTCTGG
SDGCAGGTGCNS---
 A C G T A C G T A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCAGGCATTCTGG
AAGGCAAGTGT-----
 A C G T A C G T A C G T A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCAGGCATTCTGG
GCNGCCATCTTG-
 A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCATTCTGG
TBGCACGCAA-----
 A C G T A C G T A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

NRF(NRF)/Promoter/Homer

Match Rank:7
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCAGGCATTCTGG
GTGCGCATGCGC-----
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
A T C G A G C T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCAGGCATTCTGG
GCACGTAY-----
 A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GCAGGCATTCTGG
--AGCCACTCAAG
 A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GCAGGCATTCTGG
CTGCGCATGCGC-----
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A C A T G A T C G G A T C T C G A A G C T A G C T A G T C G C A T C T A G A T C G
A T G C A G C T T C A G T G A C T C A G A T G C T G C A A C G T A T C G G A T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T