Information for 3-GGCAHVNTGCCAA (Motif 3)

C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A
Reverse Opposite:
G A C T A C G T C A T G T C A G T A G C G C T A G T A C A G C T C G T A C A G T A C T G A G T C G T A C
p-value:1e-33
log p-value:-7.746e+01
Information Content per bp:1.502
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif142.0
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets55.4 +/- 23.1bp
Average Position of motif in Background44.6 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--GGCAHVNTGCCAA-
TTGGCANNNTGCCAAG
 A C G T A C G T C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GGCAHVNTGCCAA
TGGCACCATGCCAA
 A C G T C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GGCAHVNTGCCAA
TGGCAGNCTGCCAG
 A C G T C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.78
Offset:5
Orientation:forward strand
Alignment:GGCAHVNTGCCAA-
-----CGTGCCAAG
 C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.77
Offset:7
Orientation:reverse strand
Alignment:GGCAHVNTGCCAA
-------TGCCAA
 C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.74
Offset:5
Orientation:forward strand
Alignment:GGCAHVNTGCCAA--
-----GGTGCCAAGT
 C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.70
Offset:6
Orientation:forward strand
Alignment:GGCAHVNTGCCAA-
------TTGCCAAG
 C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.70
Offset:6
Orientation:forward strand
Alignment:GGCAHVNTGCCAA--
------ATGCCAACC
 C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.66
Offset:6
Orientation:forward strand
Alignment:GGCAHVNTGCCAA--
------ATGCCCACC
 C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGCAHVNTGCCAA------
---ACTATGCCAACCTACC
 C A T G T A C G T G A C G T C A G C A T T C G A C A T G C G A T A T C G A G T C G A T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C