Information for 16-TGTCAKAARTCTA (Motif 25)

A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
Reverse Opposite:
A C G T C G T A A T C G G T C A A G C T A C G T A C G T T G A C A C G T A C T G C T G A A T G C C G T A
p-value:1e-11
log p-value:-2.545e+01
Information Content per bp:1.906
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.6 +/- 30.9bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGTCAKAARTCTA
NTGTCAN-------
 A C G T A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTCAKAARTCTA
-GCCATAAATCA-
 A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTCAKAARTCTA
GGCCATAAATCA-
 A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGTCAKAARTCTA
GGCCATAAATCA-
 A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGTCAKAARTCTA
GGCCATAAATCAC
 A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGTCAKAARTCTA
YTGWCADY------
 A C G T A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAKAARTCTA
CCTGTCAA-------
 A C G T A C G T A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGTCAKAARTCTA
TGTCANYT-----
 A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGTCAKAARTCTA
-GTCATAAAAN--
 A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAKAARTCTA
GCTGTCAA-------
 A C G T A C G T A C G T A T C G A G C T G T A C C G T A A C T G C G T A C G T A C T G A A C G T A T G C A C G T C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T