Information for 14-GGCACAGTGCMACCTC (Motif 16)

A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
Reverse Opposite:
C T A G C G T A A C T G A C T G A G C T A C G T A T C G T A G C C G T A A G T C C A G T C T A G A G C T A C T G A G T C G T A C
p-value:1e-12
log p-value:-2.980e+01
Information Content per bp:1.736
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.0 +/- 21.4bp
Average Position of motif in Background78.6 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGTGCMACCTC
TGGCACCATGCCAA---
 A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCACAGTGCMACCTC
NGTGGGCAT-----------
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGTGCMACCTC
CTTGGCANNNTGCCAA---
 A C G T A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCACAGTGCMACCTC
GGTTGGCAT-----------
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------GGCACAGTGCMACCTC
NNNNTTGGGCACNNCN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGTGCMACCTC
CCAGGAACAG---------
 A C G T A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GGCACAGTGCMACCTC
CTGGCAGNCTGCCA----
 A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GGCACAGTGCMACCTC
NNTTGGCANN----------
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GGCACAGTGCMACCTC
---ACAAAGGNBCCT-
 A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.49
Offset:-8
Orientation:reverse strand
Alignment:--------GGCACAGTGCMACCTC
NGTAGGTTGGCATNNN--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C C T G A A G T C G T C A T C A G G A C T A T C G A T G C G T C A C T G A G T A C A G T C A C G T A G T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T