Information for 11-TTCCCCACCTTGGCAA (Motif 11)

A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A
Reverse Opposite:
A C G T A C G T A C T G T A G C A G T C C G T A C T G A A T C G A C T G C A G T A C T G T C A G T A C G A C T G G T C A C G T A
p-value:1e-13
log p-value:-3.138e+01
Information Content per bp:1.736
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 24.0bp
Average Position of motif in Background64.7 +/- 0.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.68
Offset:8
Orientation:reverse strand
Alignment:TTCCCCACCTTGGCAA
--------CTTGGCAA
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:TTCCCCACCTTGGCAA-
-------NNTTGGCANN
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:TTCCCCACCTTGGCAA-
--------NTTGGCANN
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.60
Offset:9
Orientation:forward strand
Alignment:TTCCCCACCTTGGCAA
---------TTGGCA-
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:TTCCCCACCTTGGCAA
--------CCTGTCAA
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TTCCCCACCTTGGCAA
TTCCTCT---------
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A
C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TTCCCCACCTTGGCAA-
---GTTGCCATGGCAAC
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A A C G T
A C G T A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:TTCCCCACCTTGGCAA
-------ARNTGACA-
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:TTCCCCACCTTGGCAA
-------GGTTGGCAT
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.52
Offset:9
Orientation:forward strand
Alignment:TTCCCCACCTTGGCAA-
---------YTGWCADY
 A C G T C A G T A G T C A G T C A G T C A G T C G C T A T G A C A T G C A G C T A C G T A C T G A T C G G T A C G T C A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C