Information for 1-CCAGTCGGCCTCT (Motif 6)

A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
Reverse Opposite:
G T C A A T C G C G T A A C T G C T A G A T G C A G T C A C T G T C G A A T G C A G C T A C T G A C T G
p-value:1e-8
log p-value:-2.072e+01
Information Content per bp:1.778
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.8 +/- 31.0bp
Average Position of motif in Background64.9 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCAGTCGGCCTCT
--GCTCGGSCTC-
 A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAGTCGGCCTCT
CCAGACAG-----
 A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CCAGTCGGCCTCT
-----AGGCCTAG
 A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAGTCGGCCTCT
CCAGACRSVB---
 A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCAGTCGGCCTCT
---CNAGGCCT--
 A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCAGTCGGCCTCT
GGGGCCGAGGCCTG-
 A C G T A C G T A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----CCAGTCGGCCTCT
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCAGTCGGCCTCT
CCCCCTTGGGCCCC-
 A C G T A C G T A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CCAGTCGGCCTCT
AGCCAATCGG-----
 A C G T A C G T A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.49
Offset:-7
Orientation:forward strand
Alignment:-------CCAGTCGGCCTCT
AAATGGACCAATCAG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C T G A A T C G A C G T A G T C C T A G A T C G A G T C G T A C A C G T A T G C A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T