Information for 2-CCTGGCCARGMRGMCW (Motif 3)

A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
Reverse Opposite:
C G T A A T C G A C G T A T G C A G T C A C G T A T G C G A T C A C G T C A T G A T C G A T G C G A T C C T G A C A T G A C T G
p-value:1e-11
log p-value:-2.629e+01
Information Content per bp:1.599
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif9.95%
Number of Background Sequences with motif1254.6
Percentage of Background Sequences with motif2.61%
Average Position of motif in Targets46.1 +/- 24.1bp
Average Position of motif in Background50.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTGGCCARGMRGMCW
-CGTGCCAAG------
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCTGGCCARGMRGMCW
--TTGCCAAG------
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCTGGCCARGMRGMCW
---TGCCAA-------
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCTGGCCARGMRGMCW
TCCCAGMCRAGCCCC--
 A C G T A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTGGCCARGMRGMCW
-GGTGCCAAGT-----
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCTGGCCARGMRGMCW
ATGCCCGGGCATGT-----
 A C G T A C G T A C G T A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCTGGCCARGMRGMCW
--CTGGCAGNCTGCCA
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

SP4/MA0685.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTGGCCARGMRGMCW--
-TAAGCCACGCCCCCTTT
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T A C G T A C G T
A C G T A G C T G C T A C T G A C T A G G T A C A G T C T G C A G T A C A C T G T A G C T G A C A G T C G T A C G A T C G C A T G A C T G A C T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCTGGCCARGMRGMCW
ACTAGCCAATCA----
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCTGGCCARGMRGMCW
--CTGCCCGCA-----
 A G T C G A T C A G C T C T A G A T C G A T G C G T A C T C G A C T A G A T C G T G C A T C A G A T C G T G C A A T G C G C A T
A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T