Information for 25-TTGAAATTCGGCC (Motif 52)

A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A C T G C G T A C G T A A C G T A C G T A C G T A G T C C G T A C G T A
p-value:1e-5
log p-value:-1.206e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.0 +/- 5.7bp
Average Position of motif in Background68.6 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0169.1_Sox15_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TTGAAATTCGGCC
TTGAATGAAATTCGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGAAATTCGGCC
TTTGAAACCG----
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTGAAATTCGGCC-
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTGAAATTCGGCC
ATTTGAATT-----
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTGAAATTCGGCC--
ATTGGACTTTGACCCC
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTGAAATTCGGCC--
ATGGAAAGTCGTAAAA
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

PB0186.1_Tcf3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTGAAATTCGGCC
NNTTTNTTTTNGNNN
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C
C G T A C G A T A G C T C G A T A C G T C G A T C G A T C G A T A G C T G C A T T A G C A T C G T A C G A T G C G A C T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTGAAATTCGGCC---
GTTGACCTTTGACCTTT
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T A C G T A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TTGAAATTCGGCC----
-TGGACTTTGNNCTNTG
 A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TTGAAATTCGGCC---
-TGGACTTTGNNCTCN
 A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C G T A G T C A C T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T