Information for 10-CTAGCAGAMC (Motif 41)

A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
Reverse Opposite:
A C T G A C G T A C G T A T G C A C G T A C T G A G T C A G C T C G T A A C T G
p-value:1e-7
log p-value:-1.755e+01
Information Content per bp:1.799
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif84.0
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets43.7 +/- 22.2bp
Average Position of motif in Background49.3 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTAGCAGAMC
CCAGGAACAG-
 A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTAGCAGAMC--
NNGATCTAGAACCTNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTAGCAGAMC
--NGAAGC--
 A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTAGCAGAMC-
NGNTCTAGAACCNGV
 A C G T A C G T A C G T A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTAGCAGAMC
CTTGGCAA---
 A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTAGCAGAMC
GGTCTGGCAT---
 A C G T A C G T A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTAGCAGAMC
GCTCGTAAAAA
 A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CTAGCAGAMC
CAATCACTGGCAGAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTAGCAGAMC-----
CGAAGCACACAAAATA
 A C G T A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CTAGCAGAMC
TTGGCA----
 A G T C A C G T T C G A A C T G G T A C C G T A A T C G C G T A T G C A G T A C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T