Information for 24-CGGGATCTTGCTG (Motif 41)

A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A G T C C G T A C G T A A C T G C G T A A C G T A G T C A G T C A G T C A C T G
p-value:1e-3
log p-value:-7.398e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.0 +/- 25.6bp
Average Position of motif in Background70.5 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGGGATCTTGCTG---
-GGCCYCCTGCTGDGH
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CGGGATCTTGCTG-----
---NNTCCTGCTGTGNNN
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CGGGATCTTGCTG---
------CCTGCTGAGH
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGGGATCTTGCTG
GCCGCCATCTTG---
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGGGATCTTGCTG--
----AATTTGCTGAC
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGGGATCTTGCTG
ANCAGGATGT-----
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CGGGATCTTGCTG------
----AAANTGCTGACTNAG
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CGGGATCTTGCTG-----
---TNTCCTGCTGTGNNG
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Mafb/MA0117.2/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGGGATCTTGCTG---
----AAAATGCTGACT
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CGGGATCTTGCTG-----
---TCNCCTGCTGNGNNN
 A G T C A C T G A C T G A C T G C G T A A C G T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G