Information for 16-CAGTCAGAGAGGC (Motif 25)

A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A G T C A C G T A G T C A C G T A C T G C T G A A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.933e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.8 +/- 16.9bp
Average Position of motif in Background81.9 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGAGAGGC-
SCAGYCADGCATGAC
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGAGAGGC
CCAGACAG------
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGAGAGGC------
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGAGAGGC
TGAGTCAGCA----
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGAGAGGC
BCAGACWA------
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CAGTCAGAGAGGC
CCAATCAA------
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CAGTCAGAGAGGC
SCTGTCAVTCAV------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGAGAGGC
TCAGNGAGCGTGAC
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CAGTCAGAGAGGC--
NNNACCGAGAGTNNN
 A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGAGAGGC
CCAGACRSVB----
 A C G T A G T C C G T A A C T G A G C T A G T C C G T A A C T G G T C A A C T G C G T A C T A G A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T