Information for 2-AAGTTATAAATCCACA (Motif 6)

C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
Reverse Opposite:
C G A T A T C G A C G T A C T G C A T G C G T A A C G T A C G T A C G T C G T A C A G T T G C A C G T A A T G C A G C T A G C T
p-value:1e-13
log p-value:-3.110e+01
Information Content per bp:1.743
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.7 +/- 16.6bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
-GGCCATAAATCA---
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
-GGCCATAAATCAC--
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
-GGCCATAAATCA---
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
--GCCATAAATCA---
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:5
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
-----TCCAATCCACA
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
-NGYCATAAAWCH---
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:AAGTTATAAATCCACA--
------SSAATCCACANN
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AAGTTATAAATCCACA
-RGCCATYAATCA---
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
AAGCCATAAAA-----
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAGTTATAAATCCACA
--GTCATAAAAN----
 C T G A C T G A A T C G G A C T A C G T G C T A A C G T G T C A C G T A C G T A A C G T G A T C G T A C G T C A A T G C C G T A
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T