Information for 14-CAGAGGGCGC (Motif 27)

A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A G T C A G T C G T A C A C G T A G T C C G A T C T A G
p-value:1e-7
log p-value:-1.743e+01
Information Content per bp:1.908
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif82.3
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets50.0 +/- 25.8bp
Average Position of motif in Background48.4 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGCGC-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGC-----
ATAAGGGCGCGCGAT
 A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGCGC
AACAGATGGC--
 A C G T A C G T A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGC-----
ATAAAGGCGCGCGAT
 A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGC------
TTGGGGGCGCCCCTAG
 A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGCGC
AACAGATGGT--
 A C G T A C G T A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CAGAGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGGGCGC----
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGAGGGCGC-
---AGCGCGCC
 A G T C C G T A C T A G C G T A A C T G A C T G A C T G G T A C A C T G A G T C A C G T
A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C