Information for 8-CTTGGCAAGAGGCCAA (Motif 18)

A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
Reverse Opposite:
A C G T C A G T A C T G A C T G A T G C G T A C C G A T A T G C G C A T A C G T C T A G A G T C A T G C G T C A C G T A T A C G
p-value:1e-10
log p-value:-2.434e+01
Information Content per bp:1.653
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.2 +/- 21.4bp
Average Position of motif in Background46.7 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CTTGGCAAGAGGCCAA
--TGGCACCATGCCAA
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTTGGCAAGAGGCCAA
CTTGGCANNNTGCCAA
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTTGGCAAGAGGCCAA
-CTGGCAGNCTGCCA-
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAAGAGGCCAA
NNTTGGCANN-------
 A C G T A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAAGAGGCCAA
CTTGGCAA--------
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTTGGCAAGAGGCCAA
GTAGGGCAAAGGTCA-
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.56
Offset:8
Orientation:forward strand
Alignment:CTTGGCAAGAGGCCAA-
--------CGTGCCAAG
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.56
Offset:10
Orientation:reverse strand
Alignment:CTTGGCAAGAGGCCAA
----------TGCCAA
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTTGGCAAGAGGCCAA
-TGGGGCAAAGGTCA-
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTTGGCAAGAGGCCAA
-TAGGGCAAAGGTCA-
 A G T C A C G T C A G T A T C G T C A G A G T C G T C A C G T A T A C G G C T A C A T G A T C G T G A C A G T C G C T A T G C A
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T