Information for 14-TTTAAAAGCCATT (Motif 14)

A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A G T C A A C G T A C T G A C T G A T G C A C G T A G C T A C G T A C G T C G T A C G T A C G T A
p-value:1e-10
log p-value:-2.522e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 26.2bp
Average Position of motif in Background79.2 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TTTAAAAGCCATT----
---AAAAACCATTAAGG
 A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAAAGCCATT
GNCTATAAAAGG----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTAAAAGCCATT
TTTGAAACCG---
 A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTAAAAGCCATT
TTTAATTGCN---
 A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAAGCCATT
NATTCAAAT------
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAAGCCATT
NTTTTACGAGN----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAAGCCATT-
GTATAAAAGGCGGGG
 A C G T A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAAGCCATT-
GTATAAAAGGCGGGG
 A C G T A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PH0006.1_Barhl2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TTTAAAAGCCATT-----
--AAAAACCAATTAAGAA
 A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTTAAAAGCCATT
NAATTTTACGAGNTNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A C G T A T A C G A G T C A G T C C G T A A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T