Information for 7-GGGCTTTCTGCCA (Motif 6)

A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A
Reverse Opposite:
C A G T C T A G A C T G T A G C G T C A A C T G T C G A G T C A C T G A A C T G A T G C A T G C G T A C
p-value:1e-13
log p-value:-3.106e+01
Information Content per bp:1.774
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif51.8
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets54.7 +/- 28.3bp
Average Position of motif in Background52.8 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGGCTTTCTGCCA-
TGGCAGNCTGCCAG
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGGCTTTCTGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGGCTTTCTGCCA
TTGGCATGGTGCCA
 A C G T A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:GGGCTTTCTGCCA-
--------TGCCAA
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGGCTTTCTGCCA---
---CTGTCTGTCACCT
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGGCTTTCTGCCA
--YCTTTGTTCC-
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGGCTTTCTGCCA--
------CGTGCCAAG
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GGGCTTTCTGCCA---
------GGTGCCAAGT
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GGGCTTTCTGCCA--
-------TTGCCAAG
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGGCTTTCTGCCA
-NGCTN-------
 A C T G A T C G A T C G A G T C G A C T C A G T A C G T G T A C A C G T A C T G A G T C A G T C G T C A
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T