Information for 21-YWAGCASMMRTCWGCT (Motif 40)

A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C C G T A A C T G G T C A G A C T A C G T A C G T A T G C A C G T A C T G A G T C A C G T C G A T C T A G
p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.823
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.7 +/- 22.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:1
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-YWAGCASMMRTCWGCT----
NTTMRCACNNNVSTGYKAANT
 A C G T A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G C A T A G C T G A C T T G C A C T G A T A G C C T G A A T G C G A T C A G C T T G C A T C A G A T C G G A C T T A C G G A C T A C T G C T G A C T G A G C T A G C A T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:2
Score:0.53
Offset:8
Orientation:forward strand
Alignment:YWAGCASMMRTCWGCT--
--------NAHCAGCTGD
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

TFAP4/MA0691.1/Jaspar

Match Rank:3
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:YWAGCASMMRTCWGCT---
---------ATCAGCTGTT
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G C A T A T G C C G T A A T C G T A G C A C G T A C T G C G A T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.51
Offset:6
Orientation:forward strand
Alignment:YWAGCASMMRTCWGCT
------GCCATCTGTT
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.50
Offset:6
Orientation:forward strand
Alignment:YWAGCASMMRTCWGCT
------ACCATCTGTT
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.50
Offset:12
Orientation:reverse strand
Alignment:YWAGCASMMRTCWGCT-
------------NGCTN
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:YWAGCASMMRTCWGCT----
---------GTCAGCANNTN
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.50
Offset:9
Orientation:forward strand
Alignment:YWAGCASMMRTCWGCT-
---------ANCAGCTG
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:YWAGCASMMRTCWGCT--
--------CAGCAGCTGN
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:YWAGCASMMRTCWGCT----
--------NGTCAGCANTTT
 A G T C G C T A C G T A A C T G A G T C C G T A A T C G G T C A G T C A C T A G A C G T A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T