Information for 19-GKGCCTGGCKGGCGGC (Motif 36)

A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C
Reverse Opposite:
A C T G A G T C G T A C C A T G A G T C A G T C G T C A A C T G A T G C A G T C C G T A A C T G A C T G G T A C G T A C G T A C
p-value:1e-7
log p-value:-1.826e+01
Information Content per bp:1.809
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.0 +/- 19.5bp
Average Position of motif in Background49.5 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GKGCCTGGCKGGCGGC--
----CTGGCAGNCTGCCA
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GKGCCTGGCKGGCGGC---
---CTTGGCANNNTGCCAA
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GKGCCTGGCKGGCGGC
-GTCATGCHTGRCTGS
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C
A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GKGCCTGGCKGGCGGC-
-----TGCCCNGGGGCA
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GKGCCTGGCKGGCGGC
GGGGCTYGKCTGGGA--
 A C G T A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GKGCCTGGCKGGCGGC-
-----TGTCAGGGGGCG
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

TFAP2B/MA0811.1/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GKGCCTGGCKGGCGGC-
-----TGCCCTNGGGCA
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

TFAP2C/MA0524.2/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GKGCCTGGCKGGCGGC-
-----TGCCCTNGGGCA
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GKGCCTGGCKGGCGGC-
NAGANTGGCGGGGNGNA
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GKGCCTGGCKGGCGGC
----CTGTCTGG----
 A C T G A C T G A C T G A G T C A G T C C G A T A C T G A T C G A G T C A C G T C T A G A C T G G A T C C A T G A C T G A G T C
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T