Information for 5-GGCGCNTTTT (Motif 10)

A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T
Reverse Opposite:
T C G A T C G A T C G A T G C A G C A T T C A G G A T C A T C G T G A C T A G C
p-value:1e-9
log p-value:-2.181e+01
Information Content per bp:1.506
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif5.43%
Number of Background Sequences with motif923.6
Percentage of Background Sequences with motif1.95%
Average Position of motif in Targets52.7 +/- 26.0bp
Average Position of motif in Background49.9 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGCGCNTTTT
GGCGCGCT--
 A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GGCGCNTTTT--
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GGCGCNTTTT-
NNNTNGGGCGTATNNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GGCGCNTTTT--
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T A C G T A C G T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

E2F2/MA0864.1/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GGCGCNTTTT-
AAAATGGCGCCATTTT
 A C G T A C G T A C G T A C G T A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCGCNTTTT-
NTCGCGCGCCTTNNN
 A C G T A C G T A C G T A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCGCNTTTT
NGTGGGCAT-----
 A C G T A C G T A C G T A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCGCNTTTT-
NGGGGATTTCCC
 A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCGCNTTTT
GGGGATTTCC
 A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCGCNTTTT
AGGGGGCGGGGCTG
 A C G T A C G T A C G T A C G T A T C G A C T G T A G C C T A G A G T C C G T A A C G T A G C T A G C T A G C T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G