Information for 5-CCTATAAAADAGA (Motif 6)

A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C C G A T G A T C A C G T A C G T A C G T C G A T C G T A A C G T C G T A A C T G A C T G
p-value:1e-13
log p-value:-3.157e+01
Information Content per bp:1.869
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.3 +/- 27.7bp
Average Position of motif in Background41.2 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCTATAAAADAGA
CCAATAAAAC---
 A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCTATAAAADAGA
CCYMATAAAA----
 A C G T A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CCTATAAAADAGA
NCYAATAAAA----
 A C G T A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCTATAAAADAGA
CCAATAAAAA---
 A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCTATAAAADAGA
CCAATAAAAA---
 A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCTATAAAADAGA
NGCAATTAAA----
 A C G T A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCTATAAAADAGA
AACCCAATAAAATTCG
 A C G T A C G T A C G T A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCTATAAAADAGA
CTACCAATAAAATTCT
 A C G T A C G T A C G T A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCTATAAAADAGA-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTATAAAADAGA
GNCTATAAAAGG--
 A C G T A G T C A G T C C G A T G T C A A C G T C G T A C G T A C G T A C G T A C T A G C G T A A C T G C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T