Information for 11-AAMTGGTTGA (Motif 29)

C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A
Reverse Opposite:
C G A T A G T C C G T A C G T A G T A C A G T C G T C A C A G T C G A T C G A T
p-value:1e-6
log p-value:-1.575e+01
Information Content per bp:1.772
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif196.0
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets61.9 +/- 21.3bp
Average Position of motif in Background50.1 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AAMTGGTTGA---
-TTTGATTGATGN
 C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T A C G T A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AAMTGGTTGA
--TTGATTGN
 C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AAMTGGTTGA-----
NNANTGATTGATNTTN
 A C G T C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAMTGGTTGA-----
NNANTGATTGATNNNN
 A C G T C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAMTGGTTGA----
--ATGATKGATGRC
 C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AAMTGGTTGA-
GNNTTAATTGGTTGTT
 A C G T A C G T A C G T A C G T A C G T C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AAMTGGTTGA---
---TGATTGATGA
 C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AAMTGGTTGA-
NNNTTAATTGGTTTTT
 A C G T A C G T A C G T A C G T A C G T C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

Foxd3/MA0041.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAMTGGTTGA--
GAATGTTTGTTT
 C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A A C G T A C G T
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

BHLHE23/MA0817.1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AAMTGGTTGA
NAACATATGTTT--
 A C G T A C G T A C G T A C G T C G T A G C T A G T C A A C G T A C T G A C T G A C G T C G A T A C T G C G T A
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T A C G T A C G T