Information for 10-TAAACAAAGGGTG (Motif 13)

A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
Reverse Opposite:
A T G C C G T A A G T C A G T C A T G C A C G T A C G T A C G T A C T G A C G T A C G T A C G T C T G A
p-value:1e-11
log p-value:-2.743e+01
Information Content per bp:1.933
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.7 +/- 25.6bp
Average Position of motif in Background67.2 +/- 4.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TAAACAAAGGGTG
AAAACAAAGG---
 A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TAAACAAAGGGTG
--AACAAAGG---
 A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----TAAACAAAGGGTG
AAAGTAAACAAAAATT-
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TAAACAAAGGGTG-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

FOXP1/MA0481.1/Jaspar

Match Rank:5
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------TAAACAAAGGGTG
CAAAAGTAAACAAAG----
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TAAACAAAGGGTG-
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TAAACAAAGGGTG
--RACAAWGG---
 A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TAAACAAAGGGTG
-GAACAATGGN--
 A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:9
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------TAAACAAAGGGTG
AAAAAGTAAACAAACAC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T A C G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:10
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------TAAACAAAGGGTG
AAAAAGTAAACAAACAC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A C G T A A G T C C G T A C G T A C G T A A T C G A C T G C T A G A C G T A T C G
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T A C G T