Information for 9-TAGTGTGTACTTT (Motif 9)

A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T
Reverse Opposite:
C G T A C T G A C G T A A C T G A G C T C T G A A G T C C G T A A T G C G C T A A G T C A C G T C T G A
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.838
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.1 +/- 22.2bp
Average Position of motif in Background31.8 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TAGTGTGTACTTT----
-NNATTGGACTTTNGNN
 A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TAGTGTGTACTTT-
NNGCGTGTGTGCNGCN
 A C G T A C G T A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TAGTGTGTACTTT--------
-----TGGACTTTGNNCTNTG
 A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TAGTGTGTACTTT
---TGTTTACTTT
 A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TAGTGTGTACTTT
---TGTTTACTTT
 A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TAGTGTGTACTTT-------
-----TGGACTTTGNNCTCN
 A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TAGTGTGTACTTT----
-NNNGTGACCTTTGNNN
 A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TAGTGTGTACTTT
----GTGACCTT-
 A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T
A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TAGTGTGTACTTT--
NTNTATGTGCACATNNN
 A C G T A C G T A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TAGTGTGTACTTT-
TCCATGTTTACTTTG
 A C G T A G C T C G T A C T A G C G A T A T C G A C G T A C T G A G C T C T G A A G T C C G A T A G C T A C G T A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G