Information for 20-CAAGGAGCTATAA (Motif 24)

A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
Reverse Opposite:
A G C T A C G T C G T A A C G T C G T A A C T G G T A C C G A T A G T C G T A C A G C T A C G T A C T G
p-value:1e-9
log p-value:-2.162e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.8 +/- 28.9bp
Average Position of motif in Background55.0 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CAAGGAGCTATAA
---DGATCRATAN
 A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
A C G T A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CAAGGAGCTATAA--
----AAGCCATAAAA
 A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAAGGAGCTATAA
CAAGGHCANV---
 A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGCTATAA
BTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CAAGGAGCTATAA
-AAGGATATNTN-
 A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAAGGAGCTATAA------
---AGAGCCATAAAATTCG
 A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

ESRRB/MA0141.3/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAAGGAGCTATAA
TCAAGGTCATA---
 A C G T A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGCTATAA
NTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CAAGGAGCTATAA--
------GCAATAAAA
 A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CAAGGAGCTATAA
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C T G A C T G C G T A A C T G G T A C C G A T C G T A C G A T C G T A C T G A
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A