Information for 15-ATGGATCACC (Motif 39)

C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
Reverse Opposite:
A C T G A C T G A C G T A C T G C G T A A C G T A G T C A G T C C T G A A C G T
p-value:1e-4
log p-value:-9.878e+00
Information Content per bp:1.935
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets61.4 +/- 26.3bp
Average Position of motif in Background51.1 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ATGGATCACC
-NGGATTAN-
 C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATCACC
NTATCGATTA--
 A C G T A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATGGATCACC
NTATYGATCH--
 A C G T A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGGATCACC
TTATCGATTA--
 A C G T A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T A C G T

JUND/MA0491.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATGGATCACC
NATGAGTCACN
 A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

FOS/MA0476.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGGATCACC
NATGAGTCANN
 A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATGGATCACC----
--GGACCACCCACG
 C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

FOSL1/MA0477.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATGGATCACC
NATGAGTCACC
 A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATGGATCACC
AATGTATCAAT
 A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

PB0142.1_Jundm2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATGGATCACC--
ATTGATGAGTCACCAA
 A C G T A C G T A C G T A C G T C G T A A G C T A C T G A C T G C G T A A C G T A G T C C G T A A G T C G T A C A C G T A C G T
T G C A C A G T A C G T C T A G T C G A A G C T A C T G G T C A A T C G G A C T T G A C C T G A A G T C G T A C C T G A G T C A