Information for 9-CCAGACCAGT (Motif 33)

G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T
Reverse Opposite:
C T G A A G T C A C G T C T A G A C T G A G C T A T G C A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.784e+01
Information Content per bp:1.838
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif199.5
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets52.8 +/- 31.0bp
Average Position of motif in Background50.4 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACCAGT
ATGCCAGACN---
 A C G T A C G T A C G T G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAGACCAGT
CCAGACRSVB
 G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAGACCAGT
CCAGACAG--
 G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCAGACCAGT---
TCCCAGMCRAGCCCC
 A C G T A C G T G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T A C G T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACCAGT--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAGACCAGT
BCAGACWA--
 G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAGACCAGT--
-AAGGCAAGTGT
 G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAGACCAGT
CCTCACCTG-
 G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAGACCAGT---
-AAAACCGGTTTT
 G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T A C G T A C G T A C G T
A C G T G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

TFCP2/MA0145.3/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCAGACCAGT--
--AAACCGGTTT
 G T A C G T A C C G T A T A C G T C G A T G A C A G T C G T C A A C T G G A C T A C G T A C G T
A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T