Information for 12-ACTAGCGGTGCHT (Motif 28)

C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
Reverse Opposite:
T G C A C A G T A C T G G A T C T G C A G T A C G T A C C T A G A G T C G C A T C T G A A T C G A C G T
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.707
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif45.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets52.6 +/- 30.5bp
Average Position of motif in Background59.4 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGCGGTGCHT
GVACAGNMTGTYCTB
 A C G T A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACTAGCGGTGCHT
AGNACAGNCTGTTCTN
 A C G T A C G T A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGCGGTGCHT
AGNACANNNTGTNCTN
 A C G T A C G T A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGCGGTGCHT
NNTCCTGCTGTGNNN
 A C G T A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACTAGCGGTGCHT
-CCAGCTGTTN--
 C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGCGGTGCHT
GRACAGWMTGTYCTB
 A C G T A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ACTAGCGGTGCHT
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:8
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------ACTAGCGGTGCHT
ACCCCTAATTAGCGGTG---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACTAGCGGTGCHT
CAGCAGCTGN----
 A C G T C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:ACTAGCGGTGCHT
-CCTGCTGAGH--
 C G T A A T G C G A C T C G T A A C T G A G T C C A T G A C T G A C G T C A T G A G T C G C T A A C G T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T