Information for 13-MTGGSCCRYCKKCCAG (Motif 20)

G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A C T G G T A C G T C A A C T G C T G A A G C T A C T G A T C G A T G C A G T C A G T C C G T A A C G T
p-value:1e-9
log p-value:-2.236e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.6 +/- 26.0bp
Average Position of motif in Background70.7 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:MTGGSCCRYCKKCCAG
--TGGCAGNCTGCCAG
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:MTGGSCCRYCKKCCAG
CTTGGCANNNTGCCAA
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MTGGSCCRYCKKCCAG
-TTGGCATGGTGCCA-
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---MTGGSCCRYCKKCCAG
TGCCTGCGYCMCCTT----
 A C G T A C G T A C G T G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:MTGGSCCRYCKKCCAG--
--CGACCAACTGCCATGC
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:MTGGSCCRYCKKCCAG---
---------ATGCCAGACN
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:MTGGSCCRYCKKCCAG
----GCCATCTGTT--
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:MTGGSCCRYCKKCCAG
----------TGCCAA
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:MTGGSCCRYCKKCCAG
-----CCAACTGCCA-
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:MTGGSCCRYCKKCCAG
---SNGCACCTGCHS-
 G T C A A C G T A C T G A C T G T A C G A T G C A G T C C T G A A G C T A G T C A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T