Information for 9-GGGGATGCCWAATCCC (Motif 13)

T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C
Reverse Opposite:
C T A G A C T G A C T G T G C A C G A T A G C T C G A T A C T G A C T G A T G C G T C A G C A T T A G C G T A C A G T C A T G C
p-value:1e-10
log p-value:-2.524e+01
Information Content per bp:1.723
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.0 +/- 16.8bp
Average Position of motif in Background46.7 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGGGATGCCWAATCCC
---GGTGCCAAGT---
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGGGATGCCWAATCCC
---CGTGCCAAG----
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGGGATGCCWAATCCC---
---GNNAGCTAATCCCCCN
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GGGGATGCCWAATCCC
-----TGCCAA-----
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GGGGATGCCWAATCCC
-------CTTAATCCC
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.56
Offset:9
Orientation:forward strand
Alignment:GGGGATGCCWAATCCC-
---------TAATCCCN
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGGGATGCCWAATCCC----
---GNNNATTAATCCCTNCN
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGGGATGCCWAATCCC----
---GANNATTAATCCCTNNN
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GGGGATGCCWAATCCC-
-------GCTAATCCCC
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGGGATGCCWAATCCC
----ATGCCAACC---
 T A C G C T A G C A T G A T C G C G T A A C G T A T C G G T A C A G T C C G T A C T G A C G T A A C G T G T A C A G T C A G T C
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T