Information for 4-CCYCCCGCWGCCAGCA (Motif 9)

A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
Reverse Opposite:
A G C T A T C G A G T C A C G T A C T G A C T G A G T C C G A T A C T G A T G C A T C G T C A G A C T G C T G A C T A G A C T G
p-value:1e-11
log p-value:-2.614e+01
Information Content per bp:1.786
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.7 +/- 18.2bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCYCCCGCWGCCAGCA
GACCCCCCGCTGCGC---
 A C G T A C G T A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCYCCCGCWGCCAGCA
GACCCCCCGCTGTGC---
 A C G T A C G T A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CCYCCCGCWGCCAGCA
-------CTGCCCGCA
 A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCYCCCGCWGCCAGCA
GACCCCCCGCTGTG----
 A C G T A C G T A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:CCYCCCGCWGCCAGCA
--------TGCCAA--
 A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCYCCCGCWGCCAGCA
------CGTGCCAAG-
 A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCYCCCGCWGCCAGCA
GGCCYCCTGCTGDGH---
 A C G T A C G T A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CCYCCCGCWGCCAGCA
-------TTGCCAAG-
 A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCYCCCGCWGCCAGCA
CGCCTCAGGCA-------
 A C G T A C G T A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCYCCCGCWGCCAGCA
GACCCCCCGCGAAG----
 A C G T A C G T A G T C A G T C A G C T G T A C A G T C A T G C A T C G A G T C C G T A A C T G A G T C A G T C G T C A C T A G T A G C C T G A
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G A C G T A C G T A C G T A C G T