Information for 1-TGTTGACTTTGGGAGA (Motif 3)

A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
Reverse Opposite:
C G A T A G T C A C G T A T G C A G T C A G T C C G T A G T C A C T G A C T A G A C G T G T A C C G T A G T C A A G T C C G T A
p-value:1e-13
log p-value:-3.135e+01
Information Content per bp:1.806
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.7 +/- 18.1bp
Average Position of motif in Background43.0 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGTTGACTTTGGGAGA
NNTGTTTATTTTGGCA--
 A C G T A C G T A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTTGACTTTGGGAGA
TGTTTACTTAGG----
 A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGTTGACTTTGGGAGA
--TTGACTTTT-----
 A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGTTGACTTTGGGAGA
BSNTGTTTACWYWGN----
 A C G T A C G T A C G T A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGACTTTGGGAGA
NNATTGGACTTTNGNN--
 A C G T A C G T A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGACTTTGGGAGA
NTTATTGATTTTTT----
 A C G T A C G T A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTTGACTTTGGGAGA
TGTTTACTTT------
 A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TGTTGACTTTGGGAGA
TCCATGTTTACTTTG-----
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGTTGACTTTGGGAGA
TGTTTACTTT------
 A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTTGACTTTGGGAGA
ANTATCGATTTTTN----
 A C G T A C G T A C G T C T A G A C G T C G A T A C T G C G T A A G T C A G C T A C G T A C G T C T A G A C T G A T C G C G T A C T A G C G T A
C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T A C G T A C G T A C G T A C G T