Information for 4-CCRCAGCGGGMAS (Motif 10)

A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G
Reverse Opposite:
A T G C A C G T A C G T A T G C A G T C A T G C C T A G A G T C A C G T A C T G A G C T A C T G A C T G
p-value:1e-10
log p-value:-2.498e+01
Information Content per bp:1.887
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.7 +/- 15.9bp
Average Position of motif in Background60.7 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCRCAGCGGGMAS--
DCHCAGCAGGRGGCC
 A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCRCAGCGGGMAS
-CACAGCAGGGGG
 A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCRCAGCGGGMAS
GAGCACAGCAGGACA
 A C G T A C G T A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCRCAGCGGGMAS
DCTCAGCAGG---
 A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCRCAGCGGGMAS
CCACACAGCAGGAGA
 A C G T A C G T A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CCRCAGCGGGMAS-
----GGCGGGAARN
 A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G A C G T
A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCRCAGCGGGMAS
CCACACAGCAGGAGA
 A C G T A C G T A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCRCAGCGGGMAS--
-CACAGCGGGGGGTC
 A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G A C G T A C G T
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

E2F4/MA0470.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCRCAGCGGGMAS-
---GGGCGGGAAGG
 A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G A C G T
A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCRCAGCGGGMAS
--CWGGCGGGAA-
 A G T C A G T C C T G A A G T C G T C A A C T G A G T C A T C G A C T G A T C G G T C A C G T A A T C G
A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T