Information for 9-CCCTGGTGTGGTC (Motif 21)

A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A G T C G T C A A G T C C G T A A G T C A T G C C G T A A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.836e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.5 +/- 17.3bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCCTGGTGTGGTC--
---CAGTGTGGTCGC
 A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGGTGTGGTC
CCCCCTGCTGTG---
 A C G T A C G T A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCCTGGTGTGGTC-
--CGTGGGTGGTCC
 A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C A C G T
A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCCTGGTGTGGTC--
---NNHTGTGGTTWN
 A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCCTGGTGTGGTC
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCTGGTGTGGTC
CCCCCCCGGGGGGGT-
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCTGGTGTGGTC
CCCCCCCGGGGGGGT-
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCTGGTGTGGTC
CACCCCCGGGGGGG--
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCCTGGTGTGGTC-
----GCTGTGGTTT
 A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCCTGGTGTGGTC------
--GGCGAGGGGTCAAGGGC
 A G T C A G T C A G T C A C G T A T C G A C T G C G A T A C T G A C G T A C T G A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C