Information for 1-TGTCKGGTGGSGT (Motif 1)

A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T
Reverse Opposite:
C T G A A G T C A T G C A T G C A G T C C T G A A G T C A G T C G T A C A C T G C T G A A G T C T C G A
p-value:1e-15
log p-value:-3.545e+01
Information Content per bp:1.902
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.1 +/- 26.4bp
Average Position of motif in Background66.0 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCKGGTGGSGT
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTCKGGTGGSGT
CTGTCTGG------
 A C G T A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGTCKGGTGGSGT
TGTCAGGGGGCG-
 A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGTCKGGTGGSGT
VBSYGTCTGG------
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGTCKGGTGGSGT---
GTATTGGGTGGGTAATT
 A C G T A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PB0107.1_Ascl2_2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGTCKGGTGGSGT---
NATNGGGNGGGGANAN
 A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T A C G T A C G T A C G T
C T G A T G C A G A C T T C G A C T A G C T A G T C A G G A T C A C T G C A T G A T C G C A T G G C T A A C G T C T G A T A C G

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTCKGGTGGSGT--
NNVDGGGYGGGGCYN
 A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T A C G T A C G T
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TGTCKGGTGGSGT-----
------GTGGCGTGACNG
 A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGTCKGGTGGSGT
----GGGGGGGG-
 A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T
A C G T A C G T A C G T A C G T C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G A C G T

Klf4/MA0039.2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGTCKGGTGGSGT
---TGGGTGGGGC
 A C G T A C T G A G C T A G T C C A T G A C T G A C T G A G C T T A C G A T C G A T C G A C T G A G C T
A C G T A C G T A C G T C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C