Information for 3-HAGGTAAACA (Motif 2)

G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A C G T A C G T T G C A G A T C G T A C A G C T C G T A
p-value:1e-27
log p-value:-6.342e+01
Information Content per bp:1.675
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif11.81%
Number of Background Sequences with motif1469.3
Percentage of Background Sequences with motif3.14%
Average Position of motif in Targets52.5 +/- 26.9bp
Average Position of motif in Background50.3 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:1
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--HAGGTAAACA---
NCWRWGTAAACANSV
 A C G T A C G T G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXC2/MA0846.1/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:HAGGTAAACA--
TAAGTAAACAAA
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

FOXO4/MA0848.1/Jaspar

Match Rank:3
Score:0.90
Offset:3
Orientation:forward strand
Alignment:HAGGTAAACA
---GTAAACA
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A
A C G T A C G T A C G T T C A G C G A T T G C A G T C A C T G A G A T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:HAGGTAAACA
AAAGTAAACA
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:5
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:HAGGTAAACA---
-ATGTAAACADGS
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A A C G T A C G T A C G T
A C G T C G T A C A G T T C A G C G A T G T C A G T C A C G T A A G T C C G T A C G A T A T C G A T G C

FOXC1/MA0032.2/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:HAGGTAAACA-
TATGTAAATAT
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:HAGGTAAACA
WAAGTAAAYA
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:8
Score:0.89
Offset:0
Orientation:forward strand
Alignment:HAGGTAAACA
AAAGTAAACA
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:HAGGTAAACA--
TATGTAAACANG
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXI1/MA0042.2/Jaspar

Match Rank:10
Score:0.89
Offset:3
Orientation:forward strand
Alignment:HAGGTAAACA
---GTAAACA
 G C A T T C G A C A T G C T A G A C G T T G C A C G T A G T C A A G T C C G T A
A C G T A C G T A C G T T C A G G C A T T G C A G T C A C G T A G A T C T C G A