Information for 6-GAACAAGTTC (Motif 10)

C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C
Reverse Opposite:
C A T G C T G A C G T A A G T C A G C T A C G T A C T G A G C T C G A T A G T C
p-value:1e-9
log p-value:-2.183e+01
Information Content per bp:1.839
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif80.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets55.3 +/- 28.2bp
Average Position of motif in Background48.2 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GAACAAGTTC--
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C G T C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PB0063.1_Sox13_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAACAAGTTC--
TTAAGAACAATAAATT
 A C G T A C G T A C G T A C G T C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0175.1_Sox4_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GAACAAGTTC---
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAACAAGTTC
-AACAAT---
 C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GAACAAGTTC--
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAACAAGTTC---
---CAAGGHCANV
 C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

TFCP2/MA0145.3/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAACAAGTTC
AAACCGGTTT
 C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C
T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GAACAAGTTC
NNCNNAACAATTNT
 A C G T A C G T A C G T A C G T C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PB0072.1_Sox5_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAACAAGTTC--
TTTAGAACAATAAAAT
 A C G T A C G T A C G T A C G T C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAACAAGTTC----
AATATACATGTAAAATT
 A C G T A C G T A C G T C T A G G C T A C T G A A G T C C G T A C T G A A C T G G C A T A G C T G T A C A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T