Information for 13-CACATGACCCTRC (Motif 20)

A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
Reverse Opposite:
A C T G A G C T G T C A A C T G A C T G A C T G A C G T A G T C C G T A A C G T T A C G C G A T A C T G
p-value:1e-8
log p-value:-1.914e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets27.0 +/- 14.3bp
Average Position of motif in Background65.0 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CACATGACCCTRC---
NNCNTGACCCCGCTCT
 A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CACATGACCCTRC---
NNNNTGACCCGGCGCG
 A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CACATGACCCTRC
----TGACCT---
 A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACATGACCCTRC
GCCACGTGACC----
 A C G T A C G T A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CACATGACCCTRC
CNNTTGACCTTTG
 A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CACATGACCCTRC---
TGTCGTGACCCCTTAAT
 A C G T A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CACATGACCCTRC
--CATGAC-----
 A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CACATGACCCTRC
---ATCACCCCAC
 A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
A C G T A C G T A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CACATGACCCTRC
----TGACCYCT-
 A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACATGACCCTRC
TCACGTGACCGG--
 A C G T A G T C G C T A A G T C C G T A A C G T T A C G C G T A A G T C A G T C A G T C A C G T C T G A A G T C
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G A C G T A C G T