Information for 4-CTCCTSCSKGCKGSRT (Motif 6)

A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T
Reverse Opposite:
G T C A A G T C A T C G A G T C G T C A A C T G A G T C G T C A A T G C A C T G A T C G C T G A A C T G A T C G C G T A A C T G
p-value:1e-12
log p-value:-2.946e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 24.1bp
Average Position of motif in Background48.3 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTCCTSCSKGCKGSRT
---CCCCCTGCTGTG-
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTCCTSCSKGCKGSRT
CNGTCCTCCC--------
 A C G T A C G T A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTCCTSCSKGCKGSRT--
---TCNCCTGCTGNGNNN
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTCCTSCSKGCKGSRT
-GGCCYCCTGCTGDGH
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCCTSCSKGCKGSRT--
---TNTCCTGCTGTGNNG
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTCCTSCSKGCKGSRT
------CCTGCTGAGH
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

GLIS3/MA0737.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CTCCTSCSKGCKGSRT-
---CTTCGTGGGGGGTC
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T A C G T
A C G T A C G T A C G T T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CTCCTSCSKGCKGSRT--
---NNTCCTGCTGTGNNN
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

GLIS1/MA0735.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CTCCTSCSKGCKGSRT--
--GCTTCGTGGGGGGTCT
 A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T A C G T A C G T
A C G T A C G T T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTCCTSCSKGCKGSRT
SNGCACCTGCHS-------
 A C G T A C G T A C G T A G T C C G A T A T G C A G T C A G C T A T G C A G T C A T C G A C G T A C T G A G T C C A G T A C T G A T G C C T A G A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T